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o. sativa

O. sativa

Oryza sativa Indica is one of the two most commonly cultivated sub-species of rice (along with O. sativa Japonica) and is the most widely grown in the hot climates of Southern Asia. The genome of Indica is very similar to that of Japonica, which is generally restricted to temperate climes such as Japan.

Genome assembly: ASM465v1

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Download genes, cDNAs, ncRNA, proteins – FASTA – GFF3

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

Genomic alignments [13] [ Show» «Hide
Oryza sativa Indica Group : Arabidopsis thaliana LASTZ_NET | stats
Oryza sativa Indica Group : Leersia perrieri LASTZ_NET | stats
Oryza sativa Indica Group : Oryza barthii LASTZ_NET | stats
Oryza sativa Indica Group : Oryza brachyantha LASTZ_NET | stats
Oryza sativa Indica Group : Oryza glaberrima LASTZ_NET | stats
Oryza sativa Indica Group : Oryza glumipatula LASTZ_NET | stats
Oryza sativa Indica Group : Oryza longistaminata LASTZ_NET | stats
Oryza sativa Indica Group : Oryza meridionalis LASTZ_NET | stats
Oryza sativa Indica Group : Oryza nivara LASTZ_NET | stats
Oryza sativa Indica Group : Oryza punctata LASTZ_NET | stats
Oryza sativa Indica Group : Oryza rufipogon LASTZ_NET | stats
Oryza sativa Indica Group : Oryza sativa Japonica Group LASTZ_NET | stats
Oryza sativa Indica Group : Vitis vinifera LASTZ_NET | stats
] Syntenies [9] [ Show» «Hide
Oryza sativa Indica Group : Oryza barthii | stats
Oryza sativa Indica Group : Oryza brachyantha | stats
Oryza sativa Indica Group : Oryza glaberrima | stats
Oryza sativa Indica Group : Oryza glumipatula | stats
Oryza sativa Indica Group : Oryza meridionalis | stats
Oryza sativa Indica Group : Oryza nivara | stats
Oryza sativa Indica Group : Oryza punctata | stats
Oryza sativa Indica Group : Oryza rufipogon | stats
Oryza sativa Indica Group : Oryza sativa Japonica Group | stats
]

Variation

What can I find? Short sequence variants.

Regulation

What can I find? Microarray annotations.

Ensembl Plants is a genome-centric portal for plant species of scientific interest

O. sativa

Oryza sativa Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after Zea mays. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. O. sativa has a compact diploid genome of approximately 500 Mb (n=12) compared with the multi-gigabase genomes of maize, wheat and barley.

Genome assembly: IRGSP-1.0

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Download genes, cDNAs, ncRNA, proteins – FASTA – GFF3

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

Genomic alignments [85] [ Show» «Hide
Oryza sativa Japonica Group : Actinidia chinensis LASTZ_NET | stats
Oryza sativa Japonica Group : Aegilops tauschii LASTZ_NET | stats
Oryza sativa Japonica Group : Amborella trichopoda LASTZ_NET | stats
Oryza sativa Japonica Group : Ananas comosus LASTZ_NET | stats
Oryza sativa Japonica Group : Arabidopsis halleri LASTZ_NET | stats
Oryza sativa Japonica Group : Arabidopsis lyrata LASTZ_NET | stats
Oryza sativa Japonica Group : Arabidopsis thaliana LASTZ_NET | stats
Oryza sativa Japonica Group : Arabis alpina LASTZ_NET | stats
Oryza sativa Japonica Group : Beta vulgaris LASTZ_NET | stats
Oryza sativa Japonica Group : Brachypodium distachyon LASTZ_NET | stats
Oryza sativa Japonica Group : Brassica napus LASTZ_NET | stats
Oryza sativa Japonica Group : Brassica oleracea LASTZ_NET | stats
Oryza sativa Japonica Group : Brassica rapa LASTZ_NET | stats
Oryza sativa Japonica Group : Camelina sativa LASTZ_NET | stats
Oryza sativa Japonica Group : Cannabis sativa female LASTZ_NET | stats
Oryza sativa Japonica Group : Capsicum annuum LASTZ_NET | stats
Oryza sativa Japonica Group : Chlamydomonas reinhardtii LASTZ_NET | stats
Oryza sativa Japonica Group : Chondrus crispus LASTZ_NET | stats
Oryza sativa Japonica Group : Citrullus lanatus LASTZ_NET | stats
Oryza sativa Japonica Group : Citrus clementina LASTZ_NET | stats
Oryza sativa Japonica Group : Coffea canephora LASTZ_NET | stats
Oryza sativa Japonica Group : Corchorus capsularis LASTZ_NET | stats
Oryza sativa Japonica Group : Cucumis melo LASTZ_NET | stats
Oryza sativa Japonica Group : Cucumis sativus LASTZ_NET | stats
Oryza sativa Japonica Group : Cyanidioschyzon merolae LASTZ_NET | stats
Oryza sativa Japonica Group : Cynara cardunculus LASTZ_NET | stats
Oryza sativa Japonica Group : Daucus carota LASTZ_NET | stats
Oryza sativa Japonica Group : Dioscorea rotundata LASTZ_NET | stats
Oryza sativa Japonica Group : Eragrostis curvula LASTZ_NET | stats
Oryza sativa Japonica Group : Eragrostis tef LASTZ_NET | stats
Oryza sativa Japonica Group : Galdieria sulphuraria LASTZ_NET | stats
Oryza sativa Japonica Group : Glycine max LASTZ_NET | stats
Oryza sativa Japonica Group : Helianthus annuus LASTZ_NET | stats
Oryza sativa Japonica Group : Hordeum vulgare LASTZ_NET | stats
Oryza sativa Japonica Group : Hordeum vulgare GoldenPromise LASTZ_NET | stats
Oryza sativa Japonica Group : Ipomoea triloba LASTZ_NET | stats
Oryza sativa Japonica Group : Leersia perrieri LASTZ_NET | stats
Oryza sativa Japonica Group : Lupinus angustifolius LASTZ_NET | stats
Oryza sativa Japonica Group : Malus domestica Golden LASTZ_NET | stats
Oryza sativa Japonica Group : Manihot esculenta LASTZ_NET | stats
Oryza sativa Japonica Group : Marchantia polymorpha LASTZ_NET | stats
Oryza sativa Japonica Group : Medicago truncatula LASTZ_NET | stats
Oryza sativa Japonica Group : Musa acuminata LASTZ_NET | stats
Oryza sativa Japonica Group : Nicotiana attenuata LASTZ_NET | stats
Oryza sativa Japonica Group : Nymphaea colorata LASTZ_NET | stats
Oryza sativa Japonica Group : Olea europaea var. sylvestris LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza barthii LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza brachyantha LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza glaberrima LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza glumipatula LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza longistaminata LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza meridionalis LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza nivara LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza punctata LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza rufipogon LASTZ_NET | stats
Oryza sativa Japonica Group : Oryza sativa Indica Group LASTZ_NET | stats
Oryza sativa Japonica Group : Ostreococcus lucimarinus LASTZ_NET | stats
Oryza sativa Japonica Group : Panicum hallii FIL2 LASTZ_NET | stats
Oryza sativa Japonica Group : Panicum hallii HAL2 LASTZ_NET | stats
Oryza sativa Japonica Group : Phaseolus vulgaris LASTZ_NET | stats
Oryza sativa Japonica Group : Physcomitrella patens LASTZ_NET | stats
Oryza sativa Japonica Group : Pistacia vera LASTZ_NET | stats
Oryza sativa Japonica Group : Populus trichocarpa LASTZ_NET | stats
Oryza sativa Japonica Group : Prunus avium LASTZ_NET | stats
Oryza sativa Japonica Group : Prunus persica LASTZ_NET | stats
Oryza sativa Japonica Group : Prunus_dulcis LASTZ_NET | stats
Oryza sativa Japonica Group : Rosa chinensis LASTZ_NET | stats
Oryza sativa Japonica Group : Saccharum spontaneum LASTZ_NET | stats
Oryza sativa Japonica Group : Selaginella moellendorffii LASTZ_NET | stats
Oryza sativa Japonica Group : Setaria italica LASTZ_NET | stats
Oryza sativa Japonica Group : Setaria viridis LASTZ_NET | stats
Oryza sativa Japonica Group : Solanum lycopersicum LASTZ_NET | stats
Oryza sativa Japonica Group : Solanum tuberosum LASTZ_NET | stats
Oryza sativa Japonica Group : Sorghum bicolor LASTZ_NET | stats
Oryza sativa Japonica Group : Theobroma cacao Belizian Criollo B97-61/B2 LASTZ_NET | stats
Oryza sativa Japonica Group : Theobroma cacao Matina 1-6 LASTZ_NET | stats
Oryza sativa Japonica Group : Trifolium pratense LASTZ_NET | stats
Oryza sativa Japonica Group : Triticum aestivum LASTZ_NET | stats
Oryza sativa Japonica Group : Triticum dicoccoides LASTZ_NET | stats
Oryza sativa Japonica Group : Triticum turgidum LASTZ_NET | stats
Oryza sativa Japonica Group : Triticum urartu LASTZ_NET | stats
Oryza sativa Japonica Group : Vigna angularis LASTZ_NET | stats
Oryza sativa Japonica Group : Vigna radiata LASTZ_NET | stats
Oryza sativa Japonica Group : Vitis vinifera LASTZ_NET | stats
Oryza sativa Japonica Group : Zea mays LASTZ_NET | stats
] Syntenies [21] [ Show» «Hide
Oryza sativa Japonica Group : Arabidopsis thaliana | stats
Oryza sativa Japonica Group : Brachypodium distachyon | stats
Oryza sativa Japonica Group : Eragrostis curvula | stats
Oryza sativa Japonica Group : Leersia perrieri | stats
Oryza sativa Japonica Group : Musa acuminata | stats
Oryza sativa Japonica Group : Oryza barthii | stats
Oryza sativa Japonica Group : Oryza brachyantha | stats
Oryza sativa Japonica Group : Oryza glaberrima | stats
Oryza sativa Japonica Group : Oryza glumipatula | stats
Oryza sativa Japonica Group : Oryza meridionalis | stats
Oryza sativa Japonica Group : Oryza nivara | stats
Oryza sativa Japonica Group : Oryza punctata | stats
Oryza sativa Japonica Group : Oryza rufipogon | stats
Oryza sativa Japonica Group : Oryza sativa Indica Group | stats
Oryza sativa Japonica Group : Panicum hallii FIL2 | stats
Oryza sativa Japonica Group : Panicum hallii HAL2 | stats
Oryza sativa Japonica Group : Setaria italica | stats
Oryza sativa Japonica Group : Setaria viridis | stats
Oryza sativa Japonica Group : Sorghum bicolor | stats
Oryza sativa Japonica Group : Vitis vinifera | stats
Oryza sativa Japonica Group : Zea mays | stats
]

Variation

What can I find? Short sequence variants and longer structural variants.

Regulation

What can I find? Microarray annotations.

Ensembl Plants is a genome-centric portal for plant species of scientific interest ]]>